- Biomolecular dynamics and functions.

- M. Matsushita, H. Ochiai, K. T. Suzuki, S. Hayashi, T. Yamamoto, A. Awazu, N. Sakamoto : Dynamic changes in the interchromosomal interaction of early histone gene loci during early development of sea urchin.

J. Cell Sci J. Cell Sci (2017) 130, 4097-4107.

Press release

- T. Kameda, S. Isami, Y. Togashi, H. Nishimori, N. Sakamoto and A. Awazu:
The 1-Particle-per-k-Nucleotides (1PkN) Elastic Network Model of DNA Dynamics with Sequence-Dependent Geometry

Frontier in Physiology. (2017) DOI: 10.3389/fphys.2017.00103.

- A. Awazu:
Prediction of nucleosome positioning by the incorporation of frequencies and distributions of three different nucleotide segment lengths into a general pseudo k-tuple nucleotide composition

Bioinfomatics. (2017) 33: 42-48.

-> See also (predictors)

- S. Seirin Lee, S. Tashiro, A. Awazu, R. Kobayashi:
A new application of the phase-field method for understanding the mechanisms of nuclear architecture reorganization

J. Math. Biol. (2017) 74, 333–354.

- Kazunori Takamiya, Keisuke Yamamoto, Shuhei Isami, Hiraku Nishimori, and Akinori Awazu:
Excluded volume effect enhances the homology pairing of model chromosomes

Nonlinear Theory and Its Applications, IEICE 7, (2016) 66-75.

- Shuhei Isami, Naoaki Sakamoto, Hiraku Nishimori, and Akinori Awazu:
Simple Elastic Network Models for Exhaustive Analysis of Long Double-Stranded DNA Dynamics with Sequence Geometry Dependence

PLoS One 10, (2015) e0143760

- A. Awazu:
Nuclear dynamical deformation-induced hetero- and euchromatin positioning

Phys. Rev. E 92, (2015) 032709

- A. Awazu:
Segregation and phase inversion of strongly and weakly fluctuating Brownian particle mixtures and a chain of such particle mixtures in spherical containers

Phys. Rev. E 90 (2014) 042308

- M. Fujii, H. Nishimor, and A. Awazu:
Influences of Excluded Volume of Molecules on Signaling Processes on Biomembrane

PLoS One 8 (2013) e62218

- R. Kawai, S. Torigoe, K. Yoshida, A. Awazu, and H. Nishimori:
Effective stochastic resonance under noise of heterogeneous amplitude

Phys. Rev. E 82 (2010) 051122

- A. Awazu: Transmissions of Rotational Motions by Coupled Deformable Gears

Prog. Theo. Phys. Sup, 161 (2006) 161

- A. Awazu: Forward and Backward Drift Motions and Inversion of Drift Directions in Small Lattice Gas System

J. Phys. Soc. Jpn. 74 (2005) 3127

- A. Awazu: History-dependent Phase Slips and Rectification of a few Coupled Oscillators System

Physica D 178 (2003) 19

(cond-mat/0202472 History-dependent Maximum Static Friction and Rectification of a System with a Few Particles in a Periodic Field)

- M. Matsushita, H. Ochiai, K. T. Suzuki, S. Hayashi, T. Yamamoto, A. Awazu, N. Sakamoto : Dynamic changes in the interchromosomal interaction of early histone gene loci during early development of sea urchin.
- Rreaction dynamics and organizations.

- A. Awazu, T. Tanabe, M. Kamitani, A. Tezuka, A. J. Nagano : Broad distribution spectrum from Gaussian to power law appears in stochastic variations in RNA-seq data.

Scientific Reports 8, (2018) 8339.

- L. Shi, K. Fujioka, N. Sakurai-Ozato, W. Fukumoto, K. Satoh, J. Sun, A. Awazu, et al.: Chromosomal Abnormalities in Human Lymphocytes after Computed Tomography Scan Procedure

Radiation Research (2018), https://doi.org/10.1667/RR14976.1.

- H. Kawazoe, Y. Nakano, ..., A. Awazu, ... :
Risk stratification of ventricular fibrillation in Brugada syndrome using noninvasive scoring methods

Heart Rhythm (2016) 13, 1947-1954.

- A. Takemoto, T. Miyamoto, F. Simono, N. Kurogi, M. Shirae-Kurabayashi, A. Awazu, K. T. Suzuki1, T. Yamamoto, N. Sakamoto:
Cilia play a role in breaking left–right symmetry of the sea urchin embryo

Genes to Cells (2016) 12362

- Koudai Hirao, Atsushi J. Nagano, and Akinori Awazu:
Noise-plasticity correlations of gene expression in the multicellular organism Arabidopsis thaliana

J. Theo. Bio. 387, (2015) 13-22

- T. Tokuyama, Y. Nakano, A. Awazu, et al.:
Deterioration of the circadian variation of heart rate variability in Brugada syndrome may contribute to the pathogenesis of ventricular fibrillation

Journal of Cardiology 64 (2014) 133-138

- R. Kawai, A. Awazu, and H. Nishimori:
Effective stochastic resonance of coupled excitable elements under noise of unequal amplitude

Phys. Rev. E 84 (2011) 021135-1-5

- A. Awazu and K. Kaneko: Discreteness-Induced Slow Relaxation in Reversible Catalytic Reaction Networks

Phys. Rev. E 81 (2010) 051920

- A. Awazu and K. Kaneko: Ubiquitous ``glassy'' relaxation in catalytic reaction networks

Phys. Rev. E 80 (2009) 041931

- A. Awazu and K. Kaneko: Self-organized criticality of a catalytic reaction network under flow

Phys. Rev. E 80 (2009) 010902(R)

- A. Awazu: Input-dependent wave propagations in asymmetric cellular automata: Possible behaviors of feed-forward loop in biological reaction network

Math. Biosci. Eng. 5 (2008) 419

- A. Awazu and K. Kaneko: Discreteness-induced Transition in Catalytic Reaction Networks

Phys. Rev. E 76 (2007) 041915

- A. Awazu and K. Kaneko: Pulse Replications and Spatially Differentiated Structure Formation in One dimensional lattice dynamical System

Math. Biosci 201 (2006) 90

- A. Awazu and K. Kaneko: Relaxation to Equilibrium Can Be Hindered
by Transient Dissipative Structures

Phys. Rev. Lett. 92, (2004) 258302

- A. Awazu, T. Tanabe, M. Kamitani, A. Tezuka, A. J. Nagano : Broad distribution spectrum from Gaussian to power law appears in stochastic variations in RNA-seq data.
- Structure formation and rheology.

- T. Niiya, A. Awazu, H. Nishimori:
Stability of transverse dunes against perturbations: A theoretical study using dune skeleton model

AEOLIAN RESEARCH 9, (2013) 63-68

- M. Fujii, A. Awazu, and H. Nishimori:
Segregation pattern reorientation of granular mixture on horizontally oscillating tray

Phys. Rev. E 85, (2012) 041304 1-4

- T. Niiya, A. Awazu, H. Nishimori:
Bifurcation Analysis of the Transition of Dune Shapes Under a Unidirectional Wind

Phys. Rev. Lett. 108, (2012) 158001 1-4

- H. Niiya, A. Awazu, H. Nishimori: Three-Dimensional Dune Skeleton Model as a Coupled Dynamical System of Two-Dimensional Cross Sections

J. Phys. Soc. Jpn. (2010) 063002

- A. Awazu: Complex Transport Phenomena in a Simple Lattice Gas System

Physica A 373 (2007) 425

- A. Awazu: Segregation and Phase Inversion in a Simple Granular System.

J. Phys. Soc. Jpn. 72 (2003) 1832 (cond-mat/0301087)

- A. Awazu: Dynamic and Static Frictions of the System with Twoparticles in a box

J. Phys. Soc. Jpn 71 (2002) 15 (cond-mat/0102246 Liquid-Solid Phase Transition and Change of Frictional Forces of the System with Two Particles in a Box)

- A. Awazu: Liquid-Solid Phase Transition of the System with Two particles in a Rectangular Box

Phys. Rev. E 63, (2001) 032102

- A. Awazu: Size Segregation and Convection of Granular Mixtures Almost Completely Packed in the Rotating Thin Box.

Phys. Rev. Lett. 84, (2000) 4585

- A. Awazu: Effective Dimension Transition of the Dynamics of Granular Materials in the Pipe

(cond-mat/0010059)

(System Width Dependency of Dynamics of Grains: Transition Between One Dimensional States and Two Dimensional States.

Powder and Grains 2001 413 (edited by Y Kishino)).

- T. Niiya, A. Awazu, H. Nishimori:
Stability of transverse dunes against perturbations: A theoretical study using dune skeleton model
- Active particle populations.

- T. Ogawa, E. Shoji, N. J. Suematsu, H. Nishimori, S. Izumi, A. Awazu, M. Iima : The Flux of Euglena gracilis Cells Depends on the Gradient of Light Intensity

PLOS ONE. (2016) DOI:http://dx.doi.org/10.1371/journal.pone.0168114

- E. Shoji, H. Nishimori, A. Awazu, S. Izumi, and M. Iima:
Localized Bioconvection Patterns and Their Initial State Dependency in Euglena gracilis Suspensions in an Annular Container

J. Phys. Soc. Jpn. 83 (2014) 043001 1-4

- S. Nakata, M. Hata, Y. S. Ikura, E. Heisler, A. Awazu, H. Kitahata, and H. Nishimori:
Motion with Memory of a Self-Propelled Object

J. Phys. Chem. C 117, (2013) 24490-24495

- Y S. Ikura, E. Heisler, A. Awazu, H. Nishimori, and S. Nakata:
Collective motion of symmetric camphor papers in an annular water channel

Phys. Rev. E 88, (2013) 012911 1-5

- E. Heisler, N. J. Suematsu, A. Awazu, and H. Nishimor:
Swarming of self-propelled camphor boats

Phys. Rev. E 85, (2012) 055201(R) 1-4

- E. Heisler, N. J. Suematsu, A. Awazu, and H. Nishimor:
Collective motion and phase transitions of symmetric camphor boats

J. Phys. Soc. Jpn. 81 (2012) 074605

- N. J. Suematsu, A. Awazu, S. Izumi, S. Nakata, H. Nishimori:
Localized bioconvection of Euglena caused by phototaxis in the lateral direction

J. phys. Soc. Jpn. 80 (2011) 064003 1-8

- M. Fujii, A. Awazu, and H. Nishimori: Saddle-Node Bifurcation to Jammed State for Quasi-One-Dimensional Counter Chemotactic Flow

Phys. Rev. E 82 (2010) 015102(R)

- N. J. Suematsu, S. Nakata, A. Awazu, and H. Nishimori: Collective behavior of inanimate boats

Phys. Rev. E 81 (2010) 056210

- M. Fujii, A. Awazu, and H. Nishimori: Counter Chemotactic Flow in Quasi-One-Dimensional Path

J.Phys.Soc.Jpn. 78,(2009) 073801

- A. Awazu: Network Structure Formations in Pulsating Particle Populations

Phys. Rev. E 76 (2007) 055101(R)

- A. Awazu: Cellular Automaton Rule184++C. A Simple Model for the Complex Dynamics of Various Particles Flow

Phys. Lett. A 261, (1999) 309

- A. Awazu: Dynamics of Two Equivalent Lanes Traffic Flow Model:Self-Organization of the Slow Lane and Fast Lane

J.Phys.Soc.Jpn. 67,(1998) 1071

- T. Ogawa, E. Shoji, N. J. Suematsu, H. Nishimori, S. Izumi, A. Awazu, M. Iima : The Flux of Euglena gracilis Cells Depends on the Gradient of Light Intensity

- Doctoral Thesis (Osaka Prefecture University in 2001.)